Introduction | Kernel density curves | Quantifying overlap | Confidence intervals | Summary of recommendations | Caveats | References
Package: overlap 0.3.5
Liz Campbell
overlap: Estimates of Coefficient of Overlapping for Animal Activity Patterns
Provides functions to fit kernel density functions to data on temporal activity patterns of animals; estimate coefficients of overlapping of densities for two species; and calculate bootstrap estimates of confidence intervals.
Authors:
overlap_0.3.5.tar.gz
overlap_0.3.5.zip(r-4.7-x86_64)overlap_0.3.5.zip(r-4.7-arm64)overlap_0.3.5.zip(r-4.6-x86_64)overlap_0.3.5.zip(r-4.6-arm64)overlap_0.3.5.zip(r-4.5-x86_64)
overlap_0.3.5.tgz(r-4.6-x86_64)overlap_0.3.5.tgz(r-4.6-arm64)overlap_0.3.5.tgz(r-4.5-x86_64)overlap_0.3.5.tgz(r-4.5-arm64)
overlap_0.3.5.tar.gz(r-4.7-arm64)overlap_0.3.5.tar.gz(r-4.7-x86_64)overlap_0.3.5.tar.gz(r-4.6-arm64)overlap_0.3.5.tar.gz(r-4.6-x86_64)
overlap_0.3.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
overlap/json (API)
| # Install 'overlap' in R: |
| install.packages('overlap', repos = c('https://mikemeredith.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mikemeredith/overlap/issues
Datasets:
- kerinci - Times of 'capture' of large mammals
- pigObs - Simulated data for diel activity patterns
- pigTrue - Simulated data for diel activity patterns
- simCalls - Simulated data for bird calls influenced by sunrise
- tigerObs - Simulated data for diel activity patterns
- tigerTrue - Simulated data for diel activity patterns
Last updated from:c373a24d78. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 80 | ||
| linux-devel-x86_64 | OK | 97 | ||
| source / vignettes | OK | 125 | ||
| linux-release-arm64 | OK | 101 | ||
| linux-release-x86_64 | OK | 98 | ||
| macos-release-arm64 | OK | 84 | ||
| macos-release-x86_64 | OK | 233 | ||
| macos-oldrel-arm64 | OK | 107 | ||
| macos-oldrel-x86_64 | OK | 243 | ||
| windows-devel-arm64 | OK | 314 | ||
| windows-devel-x86_64 | OK | 115 | ||
| windows-release-arm64 | OK | 313 | ||
| windows-release-x86_64 | OK | 82 | ||
| windows-oldrel-x86_64 | OK | 75 | ||
| wasm-release | OK | 75 |
Exports:bootCIbootCIlogitbootEstbootstrapdensityFitdensityPlotgetBandWidthoverlapEstoverlapPlotoverlapTrueresamplesunTime
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Functions to estimate overlap of temporal activity patterns of animals | overlap-package overlap |
| Confidence interval calculation from bootstrap samples. | bootCI bootCIlogit |
| Functions to generate bootstrap estimates of overlap | bootEst bootstrap resample |
| Fits von Mises kernel density to time-of-day data. | densityFit |
| Plot fitted kernel densities | densityPlot |
| Times of 'capture' of large mammals | Example data kerinci |
| Optimal bandwidth calculation | getBandWidth |
| Estimates of coefficient of overlapping | overlapEst |
| Plot overlapping kernel densities | overlapPlot |
| Calculates the true coefficient of overlapping between two distributions. | overlapTrue |
| Simulated data for bird calls influenced by sunrise | simCalls |
| Simulated data for diel activity patterns | pigObs pigTrue simulatedData tigerObs tigerTrue |
| Convert clock times to sun times | sunTime |