Package: overlap 0.3.5
Liz Campbell
overlap: Estimates of Coefficient of Overlapping for Animal Activity Patterns
Provides functions to fit kernel density functions to data on temporal activity patterns of animals; estimate coefficients of overlapping of densities for two species; and calculate bootstrap estimates of confidence intervals.
Authors:
overlap_0.3.5.tar.gz
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overlap.pdf |overlap.html✨
overlap/json (API)
NEWS
| # Install 'overlap' in R: |
| install.packages('overlap', repos = c('https://mikemeredith.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mikemeredith/overlap/issues
- kerinci - Times of 'capture' of large mammals
- pigObs - Simulated data for diel activity patterns
- pigTrue - Simulated data for diel activity patterns
- simCalls - Simulated data for bird calls influenced by sunrise
- tigerObs - Simulated data for diel activity patterns
- tigerTrue - Simulated data for diel activity patterns
Last updated 2 years agofrom:c373a24d78. Checks:OK: 3 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 18 2024 |
| R-4.5-win-x86_64 | OK | Nov 18 2024 |
| R-4.5-linux-x86_64 | OK | Nov 18 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 18 2024 |
| R-4.4-mac-x86_64 | NOTE | Nov 18 2024 |
| R-4.4-mac-aarch64 | NOTE | Nov 18 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 18 2024 |
| R-4.3-mac-x86_64 | NOTE | Nov 18 2024 |
| R-4.3-mac-aarch64 | NOTE | Nov 18 2024 |
Exports:bootCIbootCIlogitbootEstbootstrapdensityFitdensityPlotgetBandWidthoverlapEstoverlapPlotoverlapTrueresamplesunTime
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Functions to estimate overlap of temporal activity patterns of animals | overlap-package overlap |
| Confidence interval calculation from bootstrap samples. | bootCI bootCIlogit |
| Functions to generate bootstrap estimates of overlap | bootEst bootstrap resample |
| Fits von Mises kernel density to time-of-day data. | densityFit |
| Plot fitted kernel densities | densityPlot |
| Times of 'capture' of large mammals | Example data kerinci |
| Optimal bandwidth calculation | getBandWidth |
| Estimates of coefficient of overlapping | overlapEst |
| Plot overlapping kernel densities | overlapPlot |
| Calculates the true coefficient of overlapping between two distributions. | overlapTrue |
| Simulated data for bird calls influenced by sunrise | simCalls |
| Simulated data for diel activity patterns | pigObs pigTrue simulatedData tigerObs tigerTrue |
| Convert clock times to sun times | sunTime |